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Friday, October 18, 2013

Biomarkers in Medicine - index Oct 2013



index

Editorial


 Beyond BRCA1/2: polygenic, ‘polyfunctional’ molecular circuitry model to predict breast cancer risk
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Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 675-678.
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Pteridine detection in urine: the future of cancer diagnostics?
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Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 679-681.
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News & Views


 News & Views ... Biomarkers in Medicine
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 683-686.
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Research Highlights: Liver dysfunction score predicts prognosis in advanced chronic heart failure
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 687-690.
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Clinical Trial Commentary


Analysis of the 2010–2012 results of the multicenter external proficiency study for 25-hydroxyvitamin D
, , , , , , , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 691-699.
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Preliminary Communication


Salivary biomarker analysis complementing regular clinical examination
, , , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 701-708.
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Research Article


Associations between total serum GGT activity and metabolic risk: MESA
, , , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 709-721.
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A-FABP and its association with atherogenic risk profile and insulin resistance in young overweight and obese women
, , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 723-730.
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Association of adipokines with obesity in children and adolescents
, , , , , , , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 731-735.
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Serum adiponectin, leptin, resistin and RBP4 levels in obese and metabolic syndrome children with nonalcoholic fatty liver disease
, , , , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 737-745.
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Cathepsin D as an indicator of clinical outcome in early breast carcinoma during the first 3 years of follow-up
, , , , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 747-758.
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Defining the seriousness of proliferative vitreoretinopathy by aspiration of cytokines from the anterior chamber
, , , , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 759-767.
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Review


Exosomes: the future of biomarkers in medicine
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Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 769-778.
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Urinary biomarkers of bladder cancer: an update and future perspectives
, ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 779-790.
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Biomarkers in childhood non-Hodgkin’s lymphomas
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 791-801.
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Cell surface membrane proteins as personalized biomarkers: where we stand and where we are headed
, , , ,
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 803-819.
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Acknowledgements


 Acknowledgements
Biomarkers in Medicine, October 2013, Vol. 7, No. 5, Pages 821-821.
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Phase 0 clinical trials: theoretical and practical implications in oncologic drug development



open access

Wednesday, October 16, 2013

Experience of BRCA1/2 mutation-negative young women from families with hereditary breast and ovarian cancer: a qualitative study



open access

The complete article is available as a provisional PDF. The fully formatted PDF and HTML versions are in production. 

 Background

Little is known about the experience of young women who become aware of their parent's BRCA1 or BRCA2 (BRCA) mutation status as adolescents or young adults. There is also currently a gap in the literature pertaining to those who are found to be negative for their familial mutation. We aimed to investigate the experience of these mutation-negative young women from hereditary breast and ovarian cancer (HBOC) families.

Methods

Using a semi-structured questionnaire we interviewed 8 women. All of the women were non-carriers of their familial mutation and had learned of the mutation in their family as adolescents or young adults at least 6 months prior to undergoing genetic testing. All interviews were audio recorded, transcribed, and independently analyzed by the investigators. This was followed by an in-depth cross-case analysis, enabling the formulation of emergent themes.

Results

The women's age ranged from 22 to 37 years old and all were of Ashkenazi Jewish descent. Prominent emergent themes from the interviews included the impact of how and when the familial mutation status was disclosed, the factors influencing when a young woman chooses to undergo predictive genetic testing, the predictors of post-test adjustment and risk perception, as well as the impact of familial cancer experience versus the familial mutation.

Conclusions

By eliciting detailed patient narratives we have begun to show that this generation of BRCA mutation-negative young women is likely still affected by the degree of cancer history in their family, even with their understanding of the genetic contribution to disease. Larger studies with tightened participant characteristics, as well as studies involving women from different cultural backgrounds, are needed to further define the experience and needs of true negative young women from HBOC families.

The complete article is available as a provisional PDF. The fully formatted PDF and HTML versions are in production.



 

SGO Women's News



SGO news briefs

Gynecologic Oncology: recent articles



Gynecologic Oncology (subscriber based journal)

Articles in Press are accepted, peer reviewed articles that are not yet assigned to an issue, but are citable using DOI - find out more.
1

Uterine adenosarcomas: A dual-institution update on staging, prognosis and survival

Original Research Article
In Press, Uncorrected Proof, Available online 14 October 2013
Brandon Bernard, Blaise A. Clarke, Janet I. Malowany, Jessica McAlpine, Cheng-Han Lee, Eshetu G. Atenafu, Sarah Ferguson, Helen Mackay
For purchase
2

Early Stage Papillary Serous or Clear Cell Carcinoma Confined to or Involving an Endometrial Polyp: Outcomes With and Without Adjuvant Therapy

Original Research Article
In Press, Accepted Manuscript, Available online 14 October 2013
Christine N. Chang-Halpenny, Sathima Natarajan, Julie Hwang-Graziano
For purchase
3

Single port gasless laparoscopy-assisted mini-laparotomic ovarian resection (SP-GLAMOR): Reasonable treatment for large cystic ovarian tumors with suspicion of malignancy

Original Research Article
In Press, Uncorrected Proof, Available online 11 October 2013
Min Jong Song, Sung Jong Lee, Sie Hyeon Yoo, Yong Han Seo, Joo Hee Yoon
For purchase
4

The Wnt/ß-Catenin Pathway in Ovarian Cancer: A Review

Review Article
In Press, Accepted Manuscript, Available online 11 October 2013
Rebecca C. Arend, Angelina I. Londoño-Joshi, J. Michael Straughn Jr., Donald J. Buchsbaum
For purchase
5

Lymphatic and nerve distribution throughout the parametrium

Original Research Article
In Press, Uncorrected Proof, Available online 11 October 2013
C. Bonneau, A. Cortez, R. Lis, M. Mirshahi, A. Fauconnier, M. Ballester, E. Daraï, C. Touboul
For purchase
6

Impact of Age-Adjusted Charlson Comorbidity score on outcomes for patients with early-stage endometrial cancer

Original Research Article
In Press, Uncorrected Proof, Available online 11 October 2013
Jared R. Robbins, Omar H. Gayar, Mark Zaki, Meredith Mahan, Thomas Buekers, Mohamed A. Elshaikh
For purchase
7

Quality of life and treatment response among women with platinum-resistant versus platinum-sensitive ovarian cancer treated for progression: A prospective analysis

Original Research Article
In Press, Accepted Manuscript, Available online 11 October 2013
Vanessa L. Beesley, Adele C. Green, David K. Wyld, Peter O’Rourke, Leesa F. Wockner, Anna deFazio, Phyllis N. Butow, Melanie A. Price, Keith R. Horwood, Alexandra M. Clavarino, Australian Ovarian Cancer Study Group, Australian Ovarian Cancer Study–Quality of Life Study Investigators, Penelope M. Webb
For purchase
8

Self-collecting a cervico-vaginal specimen for cervical cancer screening: An exploratory study of acceptability among medically underserved women in rural Appalachia

Original Research Article
In Press, Uncorrected Proof, Available online 11 October 2013
Robin C. Vanderpool, Maudella G. Jones, Lindsay R. Stradtman, Jennifer S. Smith, Richard A. Crosby
For purchase
9

Prospective assessment of the prevalence of pelvic, paraaortic and high paraaortic lymph node metastasis in endometrial cancer

Original Research Article
In Press, Uncorrected Proof, Available online 9 October 2013
Sanjeev Kumar, Karl C. Podratz, Jamie N. Bakkum-Gamez, Sean C. Dowdy, Amy L. Weaver, Michaela E. McGree, William A. Cliby, Gary L. Keeney, Gillian Thomas, Andrea Mariani
For purchase
10

Evaluation of the quality of the management of cancer of the corpus uteri — Selection of relevant quality indicators and implementation in Belgium

Original Research Article
In Press, Uncorrected Proof, Available online 6 October 2013
J. Werbrouck, G. Bouche, E. de Jonge, G. Jacomen, V. D'Hondt, H. Denys, E. Van Limbergen, B. Vandermeersch, H. De Schutter, E. Van Eycken, F. Goffin, F. Amant
For purchase
11

Histopathology predicts clinical outcome in advanced epithelial ovarian cancer patients treated with neoadjuvant chemotherapy and debulking surgery

Original Research Article
In Press, Corrected Proof, Available online 4 October 2013
Miho Muraji, Tamotsu Sudo, Shin-ichi Iwasaki, Sayaka Ueno, Senn Wakahashi, Satoshi Yamaguchi, Kiyoshi Fujiwara, Ryuichiro Nishimura
For purchase
12

Prevention of blood transfusion with intravenous iron in gynecologic cancer patients receiving platinum-based chemotherapy

Original Research Article
In Press, Uncorrected Proof, Available online 4 October 2013
Punnada Athibovonsuk, Tarinee Manchana, Nakarin Sirisabya
For purchase
13

Phase II study of bevacizumab and pemetrexed for recurrent or persistent epithelial ovarian, fallopian tube or primary peritoneal cancer

Original Research Article
In Press, Uncorrected Proof, Available online 4 October 2013
Andrea R. Hagemann, Akiva P. Novetsky, Israel Zighelboim, Feng Gao, L. Stewart Massad, Premal H. Thaker, Matthew A. Powell, David G. Mutch, Jason D. Wright
For purchase
14

Sentinel lymph node mapping with pathologic ultrastaging: A valuable tool for assessing nodal metastasis in low-grade endometrial cancer with superficial myoinvasion

Original Research Article
In Press, Uncorrected Proof, Available online 4 October 2013
Christine H. Kim, Fady Khoury-Collado, Emma L. Barber, Robert A. Soslow, Vicky Makker, Mario M. Leitao Jr., Yukio Sonoda, Kaled M. Alektiar, Richard R. Barakat, Nadeem R. Abu-Rustum
For purchase
15

Reducing readmissions after robotic surgical management of endometrial cancer: A potential for improved quality care

Original Research Article
In Press, Uncorrected Proof, Available online 4 October 2013
Margaret I. Liang, Maggie A. Rosen, Kellie S. Rath, Aine E. Clements, Floor J. Backes, Eric L. Eisenhauer, Ritu Salani, David M. O'Malley, Jeffrey M. Fowler, David E. Cohn
For purchase
16

Clinical risk factors of PEGylated liposomal doxorubicin induced palmar plantar erythrodysesthesia in recurrent ovarian cancer patients

Original Research Article
In Press, Uncorrected Proof, Available online 4 October 2013
Emily M. Ko, Quinn Lippmann, Whitney P. Caron, William Zamboni, Paola A. Gehrig
For purchase
17

Pathological response on surgical samples is an independent prognostic variable for patients with Stage Ib2–IIb cervical cancer treated with neoadjuvant chemotherapy and radical hysterectomy: An Italian multicenter retrospective study (CTF Study)

Original Research Article
In Press, Corrected Proof, Available online 3 October 2013
A. Gadducci, E. Sartori, T. Maggino, P. Zola, S. Cosio, V. Zizioli, M. Lapresa, Elisa Piovano, F. Landoni
Open Access
18

Non-cancer life stressors contribute to impaired quality of life in ovarian cancer patients

Original Research Article
In Press, Uncorrected Proof, Available online 3 October 2013
Susan K. Lutgendorf, George M. Slavich, Koenraad DeGeest, Michael Goodheart, David Bender, Premal H. Thaker, Frank Penedo, Bridget Zimmerman, Joseph Lucci III, Luis Mendez, Katherine Collins, Anil K. Sood
 

Tuesday, October 15, 2013

ASCO: Familial Gastric and Pancreatic Cancers: Diagnosis and Screening (note: brca/lynch syndrome/genetics/familial predisposition...)



open access (see also Table 1)


CONCLUSION

Although the vast majority of gastric and pancreatic cancers
are believed to be sporadic, up to 10% of cases are diagnosed
in individuals with a family history. Family history assessment,
including review of cancer diagnoses in fırst- and
second-degree relatives, should be a part of the evaluation
of every patient diagnosed with cancer. Although gastric
and pancreatic cancers can be seen in association with various
hereditary cancer syndromes, the yield of genetic testing
in patients without a family history remains low. In contrast
to screening for colorectal cancer, screening for gastric
and pancreatic cancers is not currently recommended
for most asymptomatic individuals. Although there is currently
insuffıcient evidence that screening reduces morbidity
or mortality from gastric or pancreatic cancers, it may be a
consideration for selected individuals who meet high-risk
criteria.

Quest to offer genetic test for breast cancer risk | Reuters



Quest 

Doxil May Disappear From Market as Plant Closes (read the whole article)



Doxil 

The ASCO Post: Herb-Drug Interactions in Oncology



Post

The ASCO Post: 10-Year Breast Cancer Survival Similar Regardless of BRCA1 Mutation Status



Post

The ASCO Post: Challenging and Changing the Standard of Care for Cervical and Ovarian Cancers



 Post

October 15, 2013, Volume 4, Issue 16 

About 1% of the breast and ovarian Spanish families testing negative for BRCA1 and BRCA2 are carriers of RAD51D pathogenic variants



Abstract

RAD51D mutations have been recently identified in breast (BC) and ovarian (OC) cancer families. Although an aetiological role in OC seems to be present, the association of RAD51D mutations and BC risk is more unclear. We aimed to determine the prevalence of germline RAD51D mutations in Spanish breast/ovarian cancer families negative for BRCA1/BRCA2 mutations. We analyzed 842 index patients: 491 from BC/OC families, 171 BC families, 51 OC families, and 129 patients without family history but with early-onset BC or OC or metachronous BC and OC. Mutation detection was performed with HRM, DHPLC or Sanger sequencing. Three mutations were found in four families with BC and OC cases (0.82%). Two were novel: c.1A>T (p.Met1?) and c.667+2_667+23del, leading to the exon 7 skipping and one previously described: c.674C>T (p.Arg232*). All were present in BC/OC families with only one OC. The c.667+2_667+23del co-segregated in the family with one early onset BC and two bilateral BC cases. We also identified the c.629C>T (p.Ala210Val) variant, which was predicted in silico to be potentially pathogenic. About 1% of the BC and OC Spanish families negative for BRCA1/BRCA2 are carriers of RAD51D mutations. The presence of several BC mutation carriers, albeit in the context of familial OC, suggests an increased risk for BC, which should be taken into account in the follow-up and early detection measures. RAD51D testing should be considered in clinical setting for families with BC and OC, irrespective of the number of OC cases in the family  

National Race to End Women's Cancer | movements Matter.



 End Women's Cancer

LOGO
Don’t miss N.E.D’s GCAM weekend show at Penn Social in DC on Saturday, 11/2 at 6:30 p.m. $15 cover, tickets sold at door only.

2013 GCAM Courses: In addition to the National Race on Sunday, November 3, the 2013 Gynecologic Cancer Awareness Movement weekend will feature two FREE concurrent courses for survivors of ovarian and uterine cancer on Saturday, November 2, 2013. To register for the Ovarian Cancer Course, click here. To register for the Uterine Cancer Course, click here

National Race to End Women's Cancer | movements Matter.



 End Women's Cancer

LOGO
Don’t miss N.E.D’s GCAM weekend show at Penn Social in DC on Saturday, 11/2 at 6:30 p.m. $15 cover, tickets sold at door only.

2013 GCAM Courses: In addition to the National Race on Sunday, November 3, the 2013 Gynecologic Cancer Awareness Movement weekend will feature two FREE concurrent courses for survivors of ovarian and uterine cancer on Saturday, November 2, 2013. To register for the Ovarian Cancer Course, click here. To register for the Uterine Cancer Course, click here

OncoArray Consortium Illumina Jacques Simard Université Laval



Ofunding/research news

2013-10-15

Montreal, QC -Hundreds of researchers from North America, Europe, Australia and Asia have joined together in a consortium to identify the genetic basis of the five most common forms of cancer - breast, prostate, lung, ovarian and colorectal. The group, called the OncoArray Consortium (Illumina), developed a new customized genotyping tool - the OncoArray - manufactured by the US genomics firm Illumina.
Among other projects, the results will be used for a Québec-based project aiming to improve the early detection of breast cancer. The project is led by Université Laval professor, Jacques Simard.
"The US National Cancer Institute (NCI)-funded Genetic Associations and Mechanisms of Oncology (GAME-ON) initiative has been instrumental in bringing together multiple consortia and provides primary funding for the OncoArray Consortium. It allowed us to design a custom array that incorporates some 530,000 markers, which is planned for genotyping on over 425,000 samples from patients with one of the five types of cancer and control subjects from around the world.....
 
""The OncoArray will allow us to enhance our current understanding of the genetic factors associated with the risk of multiple cancers," said Douglas Easton, a Cancer Research UK funded professor of University of Cambridge (United Kingdom). "We are proud to be involved in this international initiative, which will significantly accelerate the pace of discovery and lead to a greater understanding of a disease that affects one in three people," he continued.......

$13.6M funding for cancer research from Terry Fox Foundation



Terry Fox funding news

"Dr. David Huntsman's team, at the BC Cancer Agency in Vancouver is studying rare cancers – sarcomas and uterine/ovarian cancers with the aim to unlocking their genetic mutations, so that those, and eventually more common cancers, will be treated more successfully. "Rare tumours offer some real advantages because they tend to be more homogeneous [similar in structure], so it's easier to find what mutation is actually causing that cancer," said Dr. Huntsman, a pathologist and medical director at the Centre for Translational and Applied Genomics. "These cancers can also be keys to unlocking biology which is important for other more common cancers."

The Patient Voice A Value Game Changer :: Canada



Longwoods.com

Essays


 

Informed consent for exome sequencing in diagnostics: exploring first experiences and views of professionals and patients



abstract

Next generation sequencing is increasingly being chosen as a diagnostic tool for cases of expected genetic, but unresolved origin. The consequential increased need for decisions on disclosure of unsolicited findings poses a challenge for the informed consent procedure. This study explored the first experiences with, and needs for, the informed consent procedure in diagnostic exome sequencing, with the stakeholders involved.
Semi-structured interviews were conducted with 11 professional experts and one professional gave a written response. Furthermore, the counseling process was observed in three cases where exome sequencing was offered, followed by interviews with the patient (representative) and the genetic counselor.
The respondents preferred an opt-out for unsolicited findings but also identified many challenges and therefore more experiences with exome sequencing was considered needed. Context-dependent decision-making was observed and an Advisory Board for unsolicited findings was considered helpful but doubts were raised about the feasibility and the possibility of undermining patients’ autonomy. Finally, respondents brought up the complexity of information provision, and division of responsibilities between clinicians and the lab.
These challenges and needs raised by stakeholders involved provide more insight in the next steps needed for an optimal informed consent procedure for exome sequencing in diagnostics.
 

Evolution of Clinical Trial Design in Early Drug Development: Systematic Review of Expansion Cohort Use in Single-Agent Phase I Cancer Trials



abstract

Purpose To evaluate the use and objectives of expansion cohorts in phase I cancer trials and to explore trial characteristics associated with their use. 

Methods We performed a systematic review of MEDLINE and EMBASE, limiting studies to single-agent phase I trials recruiting adults and published after 2006. Eligibility assessment and data extraction were performed by two reviewers. Data were assessed descriptively, and associations were tested by univariable and multivariable logistic regression. 

Results We identified 611 unique phase I cancer trials, of which 149 (24%) included an expansion cohort. The trials were significantly more likely to use an expansion cohort if they were published more recently, were multicenter, or evaluated a noncytotoxic agent. Objectives of the expansion cohort were reported in 74% of trials. In these trials, safety (80%), efficacy (45%), pharmacokinetics (28%), pharmacodynamics (23%), and patient enrichment (14%) were cited as objectives. Among expansion cohorts with safety objectives, the recommended phase II dose was modified in 13% and new toxicities were described in 54% of trials. Among trials aimed at assessing efficacy, only 11% demonstrated antitumor activity assessed by response criteria that was not previously observed during dose escalation. 

Conclusion The utilization of expansion cohorts has increased with time. Safety and efficacy are common objectives, but 26% fail to report explicit aims. Expansion cohorts may provide useful supplementary data for phase I trials, particularly with regard to toxicity and definition of recommended dose for phase II studies.