in silico
adjective & adverb
(of scientific experiments or research) conducted or produced by means of computer modeling or computer simulation.
"in silico analysis of the human genome"
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abstract
Ascertaining the clinical consequences of
BRCA1 and
BRCA2
variants of uncertain significance (VUS) is currently indispensable for
providing effective genetic counseling and preventive actions for
families with hereditary breast and ovarian cancer (HBOC). To this end,
we conducted a combination of
in silico prediction and cDNA splicing analyses of 13
BRCA1 and 10
BRCA2
VUS identified in our cohort as well as a case-control analysis in a
population-based sample of 10 recurrent VUS. We observed consistent
results between the
in silico predictions and sequencing
analyses for all analyzed VUS. An abnormal cDNA pattern was observed for
variants c.212+1G>A and c.5278-1G>A in
BRCA1 and c.516+2T>A and c.8168A>G in
BRCA2 according to
in silico
splicing prediction.. A case-control study of VUS confirmed the
polymorphisms of the c.67+62A>G, c.7008-62A>G and c.8851G>A
BRCA2 variants previously published. c.4068G>A in the
BRCA2 gene can also be considered a polymorphism due to its occurrence at a frequency greater than 1% in our population.
Our study shows that employing population-based analysis and a combination of several
in silico
methods yields highly accurate information, resulting in a reliable
tool for selecting variants for cDNA sequencing analysis in routine
cancer genetic counseling units.